
Fetching SeqPup

You can obtain this software via Internet, using anonymous
ftp, gopher or http to the IUBio server at
iubio.bio.indiana.edu.  It is located in folder
/molbio/seqpup.  Versions are available for Macintosh, MS
Windows, and various XWindows/Unix systems.  Please check
the Readme files at this archive for recent news.  Remember
to use binary FTP to fetch the .zip and .gz binary files.

Internet resource locators for this software are

    <ftp://iubio.bio.indiana.edu/molbio/seqpup/>
    <gopher://iubio.bio.indiana.edu/11/IUBio-Software+Data/molbio/seqpup/>
   <http://iubio.bio.indiana.edu/1/IUBio-Software%2bData/molbio/seqpup/>

Source code for this software is at
    <ftp://iubio.bio.indiana.edu/util/dclap/source/>

You will need to fetch one of the program archive files for
your computer system, its associated child app archive, and
fetch the essential and optional items from the "all-
systems" folder.   For example, this would be

  all-systems/ SeqPup.help, SeqPup.prefs, tables/*,  seqs/*

plus one of these groups to match your computer system

  mac/ seqpup-mac-68k.hqx and seqpup-mac-apps.hqx

  mswin/ seqpup32.zip 
  mswin/win16/seqpup16.zip and spapp1.zip 

  unix/dec-alpha-osf/ SeqPup.gz and seqpup-apps.tar.gz 
  unix/sgi-irix/ SeqPup.gz and seqpup-apps.tar.gz
  unix/sun-sol2-sparc/ SeqPup.gz and seqpup-apps.tar.gz
  unix/sun-sol2-i86/ SeqPup.gz and seqpup-apps.tar.gz
  unix/sun-sunos4-sparc/ SeqPup-sunos-mostat.gz and seqpup-apps.tar.gz 


The current software distribution comprises the following
items.

all-systems/    mac/            mswin-i86/      unix/

all-systems/
SeqPup.help         - help file (RTF format) essential
SeqPup-help.text    - help file (plain text) optional
SeqPup.prefs        - preferences file (plain text)
                     essential

tables/             - data files used by SeqPup, essential
codon.table    dro.cod   hum.cod   renzyme.table
color.table    eco.cod   rat.cod   tob.cod

appsrc/        - source to applications called by SeqPup, optional
ChildApp.c          captest.seq         fastDNAml.doc
cap.src/       clustalw.doc        fastDNAml.infile
cap2.doc       clustalw.src/       fastdnaml.src/

seqs/               - test sequence files, optional
23+28SrRNA.gb  captest.fasta       fastdnaml.phylip
5srna.gb       dros.ig             testre.map6
blue.seq       ecolac.seq          testreseq.gcg


mac:           - Macintosh, files are in binhex format
Readme
seqpup-68k.hqx      - SeqPup for Mac with Motorola 68000 processor
seqpup-ppc.hqx      - SeqPup for Mac with PowerPC processor
seqpup-apps.hqx     - child apps for mac, both 68k and
                     PPC (fat binaries)

mswin:         - MS Windows, files are in ZIP archive binary
                     format
Readme
seqpup32.zip        - SeqPup and child apps for MS Windows, 32-bit code
win16/seqpup16.zip  - Seqpup for MS Windows, 16-bit code
win16.spapp1.zip    - child apps for for mswin

unix:               - Unix, files are in TAR, Gnu ZIP format
dec-alpha-osf/      - DEC Alpha computer with OSF/1 Unix
sgi-irix/           - Silicon Graphics Iris
sun-sol2-i86/       - Sun Solaris 2 on Intel 80x86 processor
sun-sunos4-sparc/   - Sun SunOS4 on SPARC processor (or Sol2)
sun-sol2-sparc/     - Sun Solaris 2 on SPARC processor

unix/dec-alpha-osf:
               Readme     SeqPup.gz  seqpup-apps.tar.gz

unix/sgi-irix:
               Readme     SeqPup.gz  seqpup-apps.tar.gz

unix/sun-sol2-i86:
               Readme     SeqPup.gz  seqpup-apps.tar.gz

unix/sun-sol2-sparc:
               Readme     SeqPup.gz  seqpup-apps.tar.gz

unix/sun-sunos4-sparc:
Readme
SeqPup-sunos-mostat.gz   - Motif libraries are included
                     (will run on SunOS 4 or Solaris 2
                     lacking Motif libraries)
SeqPup-sunos-dyn.gz - Motif libraries are not included
seqpup-apps.tar.gz       - child apps for SPARC

Note: At this writing (Jan'96), the systems Sun-SunOS4 and
MS-Win3/16bit are not well supported by development software
that I now use (which supports more current operating
systems).  These systems will continue to be supported, but
due to time constrains on me, they now lag behind others in
updates.

Also, other operating systems will be supported depending on
popularity and requests.  Linux OS on Intel86 will be
supported when I can get hardware incompatibilities with it
and my home Intel PC straightened out.  Let me know your
favorite OS if not supported.
.
