All Packages
Index
Class Hierarchy
class java.lang.Object
class flybase.
AppResources
class flybase.
Args
(implements java.util.Enumeration)
class iubio.bioseq.
BaseKind
class iubio.bioseq.
Bioseq
(implements java.lang.Cloneable)
class iubio.bioseq.
BioseqFiled
interface iubio.readseq.
BioseqDoc
(extends iubio.readseq.
BioseqDocVals
)
class iubio.readseq.
BioseqDocImpl
(implements iubio.readseq.
BioseqDoc
, java.lang.Cloneable)
class iubio.readseq.
BasicBioseqDoc
class iubio.readseq.
EmblDoc
class iubio.readseq.
SwissDoc
class iubio.readseq.
GenbankDoc
class iubio.readseq.
XmlDoc
interface iubio.readseq.
BioseqDocVals
class iubio.readseq.
BioseqFormat
(implements iubio.readseq.
BioseqIoIface
)
class iubio.readseq.
AcedbSeqFormat
class iubio.readseq.
Asn1SeqFormat
class iubio.readseq.
BlastOutputFormat
class iubio.readseq.
ClustalSeqFormat
class iubio.readseq.
EmblSeqFormat
class iubio.readseq.
FitchSeqFormat
class iubio.readseq.
FlatFeatFormat
class iubio.readseq.
GFFSeqFormat
class iubio.readseq.
GcgSeqFormat
class iubio.readseq.
GenbankSeqFormat
class iubio.readseq.
IgSeqFormat
class iubio.readseq.
MsfSeqFormat
class iubio.readseq.
NbrfSeqFormat
class iubio.readseq.
OlsenSeqFormat
class iubio.readseq.
PaupSeqFormat
class iubio.readseq.
PearsonSeqFormat
class iubio.readseq.
PhylipSeqFormat
class iubio.readseq.
Phylip2SeqFormat
class iubio.readseq.
PirSeqFormat
class iubio.readseq.
PlainSeqFormat
class iubio.readseq.
PrettySeqFormat
class iubio.readseq.
ScfTraceFormat
class iubio.readseq.
StriderSeqFormat
class iubio.readseq.
XmlSeqFormat
class iubio.readseq.
ZukerSeqFormat
class iubio.readseq.
BioseqFormats
interface iubio.readseq.
BioseqIoIface
class iubio.readseq.
BioseqReader
(implements iubio.readseq.
BioseqReaderIface
)
class iubio.readseq.
InterleavedSeqReader
class iubio.readseq.
PlainSeqReader
class iubio.readseq.
VeryRawSeqReader
interface iubio.readseq.
BioseqReaderIface
(extends iubio.readseq.
BioseqIoIface
)
class iubio.readseq.
BioseqWriter
(implements iubio.readseq.
BioseqWriterIface
)
class iubio.readseq.
InterleavedSeqWriter
interface iubio.readseq.
BioseqWriterIface
(extends iubio.readseq.
BioseqIoIface
)
interface flybase.
ComparableVector
interface flybase.
Comparator
class flybase.
CompareStrings
(implements flybase.
ComparableVector
)
interface flybase.
CompareTo
class flybase.
Debug
class java.util.Dictionary
class flybase.
FastHashtable
(implements java.lang.Cloneable, java.io.Serializable)
class flybase.
FastProperties
class flybase.
DocFormat
class iubio.readseq.
DocItem
(implements java.lang.Cloneable)
class iubio.readseq.
FeatureItem
class iubio.readseq.
FeatureNote
class flybase.
Environ
class flybase.
FastVector
(implements java.lang.Cloneable, java.io.Serializable)
class flybase.
FastStack
class Acme.
Fmt
interface iubio.readseq.
MessageApp
class flybase.
Native
interface flybase.
ObjectComparator
class flybase.
OpenString
(implements java.io.Serializable)
interface iubio.readseq.
OutBiobaseIntf
interface iubio.readseq.
PrintableDocItem
class iubio.readseq.
Readseq
(implements java.util.Enumeration)
class iubio.readseq.
SeqFileInfo
(implements java.lang.Cloneable)
class iubio.readseq.
BioseqRecord
class iubio.bioseq.
SeqInfo
class iubio.bioseq.
SeqRange
(implements java.lang.Cloneable)
class flybase.
SortVector
class flybase.
QSortVector
class flybase.
SortedEnumeration
class flybase.
StringComparator
(implements flybase.
ObjectComparator
)
class iubio.readseq.
Testseq
class java.lang.Throwable (implements java.io.Serializable)
class java.lang.Exception
class java.io.IOException
class iubio.readseq.
ReadseqException
class iubio.bioseq.
SeqRangeException
class flybase.
Utils
class java.io.Writer
class java.io.PrintWriter
class iubio.readseq.
XmlPrintWriter
class iubio.readseq.
Writeseq
(implements java.util.Enumeration)
class iubio.readseq.
WriteseqOpts
class iubio.readseq.
XmlSeqReader
(implements iubio.readseq.
BioseqReaderIface
, iubio.readseq.
BioseqDocVals
, org.xml.sax.EntityResolver, org.xml.sax.DTDHandler, org.xml.sax.DocumentHandler, org.xml.sax.ErrorHandler)
class iubio.readseq.
XmlSeqWriter
(implements iubio.readseq.
BioseqWriterIface
)
class
app
class
cgi
class
help
class iubio.readseq.
help
class
run
class iubio.readseq.
run
(implements java.lang.Runnable)
class iubio.readseq.
app
class iubio.readseq.
cgi