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Class iubio.readseq.Writeseq

java.lang.Object
   |
   +----iubio.readseq.Writeseq

public class Writeseq
extends java.lang.Object
implements java.util.Enumeration

Constructor Index

 o Writeseq()
 o Writeseq(int)

Method Index

 o addSeq(Object, String, int, int, Object, boolean)
 o addSeq(SeqFileInfo)
 o allresults()
 o atresult()
 o canwrite()
 o close()
 o getBioseqFormat()
 o getFormat()
 o getWriter()
 o hasMoreElements()
 o moreresults()
 o nextElement()
 o nextSeq()
 o nresults()
 o open(File, int, int)
 o open(Writer, int, int)
 o removeresults()
 o restartresults()
 o result()
 o setFormat(int)
 o setWriteMask(boolean)
 o write()

Constructors

 o Writeseq
 public Writeseq()
 o Writeseq
 public Writeseq(int format)

Methods

 o getFormat
 public final int getFormat()
 o setFormat
 public void setFormat(int format)
 o getWriter
 public iubio.readseq.BioseqWriterIface getWriter()
 o getBioseqFormat
 public iubio.readseq.BioseqFormat getBioseqFormat()
 o canwrite
 public boolean canwrite()
 o nextSeq
 public iubio.readseq.SeqFileInfo nextSeq()
 o result
 public java.lang.Object result()
 o moreresults
 public boolean moreresults()
 o atresult
 public int atresult()
 o nresults
 public int nresults()
 o allresults
 public java.util.Vector allresults()
 o restartresults
 public void restartresults()
 o removeresults
 public void removeresults()
 o hasMoreElements
 public boolean hasMoreElements()
 o nextElement
 public java.lang.Object nextElement()
 o addSeq
 public void addSeq(iubio.readseq.SeqFileInfo si)
 o addSeq
 public void addSeq(java.lang.Object aSeq,
                    java.lang.String id,
                    int start,
                    int nbases,
                    java.lang.Object seqdoc,
                    boolean hasmask)
 o setWriteMask
 public void setWriteMask(boolean turnon)
 o close
 public void close() throws java.io.IOException
 o open
 public final void open(java.io.File f,
                        int outFormat,
                        int nSeqs) throws java.io.IOException
 o open
 public void open(java.io.Writer outs,
                  int outFormat,
                  int nSeqs) throws java.io.IOException
 o write
 public boolean write() throws java.io.IOException

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