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Class iubio.readseq.Writeseq
java.lang.Object
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+----iubio.readseq.Writeseq
- public class Writeseq
- extends java.lang.Object
- implements java.util.Enumeration
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Writeseq()
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Writeseq(int)
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addSeq(Object, String, int, int, Object, boolean)
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addSeq(SeqFileInfo)
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allresults()
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atresult()
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canwrite()
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close()
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getBioseqFormat()
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getFormat()
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getWriter()
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hasMoreElements()
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moreresults()
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nextElement()
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nextSeq()
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nresults()
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open(File, int, int)
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open(Writer, int, int)
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removeresults()
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restartresults()
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result()
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setFormat(int)
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setWriteMask(boolean)
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write()
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Writeseq
public Writeseq()
Writeseq
public Writeseq(int format)
getFormat
public final int getFormat()
setFormat
public void setFormat(int format)
getWriter
public iubio.readseq.BioseqWriterIface getWriter()
getBioseqFormat
public iubio.readseq.BioseqFormat getBioseqFormat()
canwrite
public boolean canwrite()
nextSeq
public iubio.readseq.SeqFileInfo nextSeq()
result
public java.lang.Object result()
moreresults
public boolean moreresults()
atresult
public int atresult()
nresults
public int nresults()
allresults
public java.util.Vector allresults()
restartresults
public void restartresults()
removeresults
public void removeresults()
hasMoreElements
public boolean hasMoreElements()
nextElement
public java.lang.Object nextElement()
addSeq
public void addSeq(iubio.readseq.SeqFileInfo si)
addSeq
public void addSeq(java.lang.Object aSeq,
java.lang.String id,
int start,
int nbases,
java.lang.Object seqdoc,
boolean hasmask)
setWriteMask
public void setWriteMask(boolean turnon)
close
public void close() throws java.io.IOException
open
public final void open(java.io.File f,
int outFormat,
int nSeqs) throws java.io.IOException
open
public void open(java.io.Writer outs,
int outFormat,
int nSeqs) throws java.io.IOException
write
public boolean write() throws java.io.IOException
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