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Class iubio.readseq.BioseqFormats

java.lang.Object
   |
   +----iubio.readseq.BioseqFormats

public class BioseqFormats
extends java.lang.Object

Variable Index

 o kMaxFormat
 o kNoformat
 o kUnknown
 o propname
 o tablestr

Constructor Index

 o BioseqFormats()

Method Index

 o bioseqFormat(int)
 o canread(int)
 o canwrite(int)
 o contentType(int)
 o contentTypeFromIndex(int)
 o formatFromContentType(String)
 o formatFromIndex(int)
 o formatFromName(String)
 o formatName(int)
 o formatNameFromIndex(int)
 o formatSuffix(int)
 o formatSuffixFromIndex(int)
 o formatTestInit()
 o formatTestLikelihood(int)
 o formatTestLine(int, OpenString, int, int)
 o formatTestLine(int, String, int, int)
 o getFormatId(String)
 o getInfo(int, String)
 o indexFromFormat(int)
 o newReader(int)
 o newWriter(int)
 o newWriter(int, int)
 o nFormats()
 o recordStartLine(int)
 o register(BioseqFormat)

Variables

 o kNoformat
 public static int kNoformat
 o kUnknown
 public static int kUnknown
 o kMaxFormat
 public static int kMaxFormat
 o propname
 public static java.lang.String propname
 o tablestr
 public static java.lang.String tablestr

Constructors

 o BioseqFormats
 public BioseqFormats()

Methods

 o nFormats
 public static int nFormats()
 o register
 public static int register(iubio.readseq.BioseqFormat formatinfo)
 o indexFromFormat
 public static int indexFromFormat(int format)
 o bioseqFormat
 public static iubio.readseq.BioseqFormat bioseqFormat(int format)
 o formatTestInit
 public static void formatTestInit()
 o recordStartLine
 public static int recordStartLine(int format)
 o formatTestLikelihood
 public static int formatTestLikelihood(int format)
 o formatTestLine
 public static boolean formatTestLine(int format,
                                      flybase.OpenString line,
                                      int atline,
                                      int skiplines)
 o formatTestLine
 public static boolean formatTestLine(int format,
                                      java.lang.String line,
                                      int atline,
                                      int skiplines)
 o formatName
 public static java.lang.String formatName(int format)
 o formatNameFromIndex
 public static java.lang.String formatNameFromIndex(int format)
 o getInfo
 public static java.lang.String getInfo(int format,
                                        java.lang.String style)
 o formatSuffixFromIndex
 public static java.lang.String formatSuffixFromIndex(int index)
 o formatSuffix
 public static java.lang.String formatSuffix(int format)
 o contentTypeFromIndex
 public static java.lang.String contentTypeFromIndex(int index)
 o contentType
 public static java.lang.String contentType(int format)
 o formatFromIndex
 public static int formatFromIndex(int format)
 o getFormatId
 public static int getFormatId(java.lang.String format)
 o formatFromName
 public static int formatFromName(java.lang.String name)
 o formatFromContentType
 public static int formatFromContentType(java.lang.String content)
 o canread
 public static boolean canread(int format)
 o canwrite
 public static boolean canwrite(int format)
 o newWriter
 public static final iubio.readseq.BioseqWriterIface newWriter(int format)
 o newWriter
 public static iubio.readseq.BioseqWriterIface newWriter(int format,
                                                         int nseqs)
 o newReader
 public static iubio.readseq.BioseqReaderIface newReader(int format)

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