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Class iubio.readseq.BioseqFormat

java.lang.Object
   |
   +----iubio.readseq.BioseqFormat

public class BioseqFormat
extends java.lang.Object
implements iubio.readseq.BioseqIoIface

Constructor Index

 o BioseqFormat()

Method Index

 o canread()
 o canwrite()
 o contentType()
 o formatDocName()
 o formatID()
 o formatName()
 o formatSuffix()
 o formatTestInit()
 o formatTestLikelihood()
 o formatTestLine(OpenString, int, int)
 o getDocument()
 o hasdoc()
 o hasseq()
 o interleaved()
 o needsamelength()
 o newReader()
 o newWriter()
 o recordStartLine()
 o setFormatID(int)

Constructors

 o BioseqFormat
 public BioseqFormat()

Methods

 o formatID
 public int formatID()
 o setFormatID
 public void setFormatID(int id)
 o formatName
 public java.lang.String formatName()
 o formatSuffix
 public java.lang.String formatSuffix()
 o contentType
 public java.lang.String contentType()
 o formatDocName
 public java.lang.String formatDocName()
 o canread
 public boolean canread()
 o newReader
 public iubio.readseq.BioseqReaderIface newReader()
 o canwrite
 public boolean canwrite()
 o newWriter
 public iubio.readseq.BioseqWriterIface newWriter()
 o interleaved
 public boolean interleaved()
 o needsamelength
 public boolean needsamelength()
 o hasdoc
 public boolean hasdoc()
 o hasseq
 public boolean hasseq()
 o getDocument
 public java.io.InputStream getDocument()
 o formatTestInit
 public void formatTestInit()
 o formatTestLine
 public boolean formatTestLine(flybase.OpenString line,
                               int atline,
                               int skiplines)
 o formatTestLikelihood
 public int formatTestLikelihood()
 o recordStartLine
 public int recordStartLine()

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