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Class iubio.bioseq.SeqInfo
java.lang.Object
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+----iubio.bioseq.SeqInfo
- public class SeqInfo
- extends java.lang.Object
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kAmino
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kDNA
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kNucleic
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kOtherSeq
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kRNA
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SeqInfo()
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add(byte[], int, int)
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add(char[], int, int)
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add(int)
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add(String, int, int)
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equals(SeqInfo)
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getACGTcounts()
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getBaseCount()
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getChecksum()
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getKind()
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getKindLabel()
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getKindLabel(int)
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getSeqInfo(int, boolean, boolean)
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init(int)
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setBaseCount(int)
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setChecksum(long)
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setKind(int)
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kOtherSeq
public static final short kOtherSeq
kDNA
public static final short kDNA
kRNA
public static final short kRNA
kNucleic
public static final short kNucleic
kAmino
public static final short kAmino
SeqInfo
public SeqInfo()
getKind
public int getKind()
getBaseCount
public int getBaseCount()
getChecksum
public long getChecksum()
setKind
public void setKind(int seqtype)
setBaseCount
public void setBaseCount(int basecount)
setChecksum
public void setChecksum(long checksum)
equals
public boolean equals(iubio.bioseq.SeqInfo si)
getACGTcounts
public int[] getACGTcounts()
init
public void init(int maxlen)
add
public void add(byte ba[],
int offset,
int len)
add
public void add(char ca[],
int offset,
int len)
add
public void add(java.lang.String s,
int offset,
int len)
add
public void add(int c)
getSeqInfo
public static iubio.bioseq.SeqInfo getSeqInfo(int maxlen,
boolean shorttest,
boolean wantcrc)
getKindLabel
public java.lang.String getKindLabel()
getKindLabel
public static java.lang.String getKindLabel(int kind)
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