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Class iubio.readseq.BioseqFormats
java.lang.Object
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+----iubio.readseq.BioseqFormats
- public class BioseqFormats
- extends java.lang.Object
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kMaxFormat
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kNoformat
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kUnknown
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propname
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tablestr
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BioseqFormats()
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bioseqFormat(int)
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canread(int)
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canwrite(int)
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contentType(int)
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contentTypeFromIndex(int)
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formatFromContentType(String)
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formatFromIndex(int)
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formatFromName(String)
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formatName(int)
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formatNameFromIndex(int)
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formatSuffix(int)
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formatSuffixFromIndex(int)
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formatTestInit()
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formatTestLikelihood(int)
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formatTestLine(int, OpenString, int, int)
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formatTestLine(int, String, int, int)
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getFormatId(String)
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getInfo(int, String)
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indexFromFormat(int)
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newReader(int)
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newWriter(int)
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newWriter(int, int)
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nFormats()
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recordStartLine(int)
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register(BioseqFormat)
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kNoformat
public static int kNoformat
kUnknown
public static int kUnknown
kMaxFormat
public static int kMaxFormat
propname
public static java.lang.String propname
tablestr
public static java.lang.String tablestr
BioseqFormats
public BioseqFormats()
nFormats
public static int nFormats()
register
public static int register(iubio.readseq.BioseqFormat formatinfo)
indexFromFormat
public static int indexFromFormat(int format)
bioseqFormat
public static iubio.readseq.BioseqFormat bioseqFormat(int format)
formatTestInit
public static void formatTestInit()
recordStartLine
public static int recordStartLine(int format)
formatTestLikelihood
public static int formatTestLikelihood(int format)
formatTestLine
public static boolean formatTestLine(int format,
flybase.OpenString line,
int atline,
int skiplines)
formatTestLine
public static boolean formatTestLine(int format,
java.lang.String line,
int atline,
int skiplines)
formatName
public static java.lang.String formatName(int format)
formatNameFromIndex
public static java.lang.String formatNameFromIndex(int format)
getInfo
public static java.lang.String getInfo(int format,
java.lang.String style)
formatSuffixFromIndex
public static java.lang.String formatSuffixFromIndex(int index)
formatSuffix
public static java.lang.String formatSuffix(int format)
contentTypeFromIndex
public static java.lang.String contentTypeFromIndex(int index)
contentType
public static java.lang.String contentType(int format)
formatFromIndex
public static int formatFromIndex(int format)
getFormatId
public static int getFormatId(java.lang.String format)
formatFromName
public static int formatFromName(java.lang.String name)
formatFromContentType
public static int formatFromContentType(java.lang.String content)
canread
public static boolean canread(int format)
canwrite
public static boolean canwrite(int format)
newWriter
public static final iubio.readseq.BioseqWriterIface newWriter(int format)
newWriter
public static iubio.readseq.BioseqWriterIface newWriter(int format,
int nseqs)
newReader
public static iubio.readseq.BioseqReaderIface newReader(int format)
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