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Class iubio.readseq.XmlDoc

java.lang.Object
   |
   +----iubio.readseq.BioseqDocImpl
           |
           +----iubio.readseq.XmlDoc

public class XmlDoc
extends iubio.readseq.BioseqDocImpl
BioseqDoc subclass for XML data

See Also:
iubio.readseq.XmlSeqReader, iubio.readseq.XmlSeqWriter

Variable Index

 o xmlprop

Constructor Index

 o XmlDoc()
 o XmlDoc(BioseqDoc)
 o XmlDoc(String)

Method Index

 o addDocLine(String)
 o addFeature(String, String, int, boolean)
 o endFeature(int, String, String)
called thru SAX parser endElement()
 o getBiodockey(String)
 o getFieldName(int)
 o getXMLFieldName(int)
 o getXMLFieldName(Integer)
 o setIndent(int)
 o setOutput(OutputStream)
 o setOutput(Writer)
 o setSourceDoc(BioseqDoc)
 o startFeature(int, String, String)
called thru SAX parser startElement() for kFeatureItem at appearance of 1st note?
 o writeTo(Writer)
 o writeTo(Writer, boolean)

Variables

 o xmlprop
 public static java.lang.String xmlprop

Constructors

 o XmlDoc
 public XmlDoc()
 o XmlDoc
 public XmlDoc(iubio.readseq.BioseqDoc source)
 o XmlDoc
 public XmlDoc(java.lang.String idname)

Methods

 o setSourceDoc
 public void setSourceDoc(iubio.readseq.BioseqDoc source)
Overrides:
setSourceDoc in class iubio.readseq.BioseqDocImpl
 o addDocLine
 public void addDocLine(java.lang.String line)
Overrides:
addDocLine in class iubio.readseq.BioseqDocImpl
 o getBiodockey
 public java.lang.String getBiodockey(java.lang.String field)
Overrides:
getBiodockey in class iubio.readseq.BioseqDocImpl
 o getFieldName
 public java.lang.String getFieldName(int kind)
Overrides:
getFieldName in class iubio.readseq.BioseqDocImpl
 o getXMLFieldName
 public static final java.lang.String getXMLFieldName(int kind)
 o getXMLFieldName
 public static java.lang.String getXMLFieldName(java.lang.Integer kind)
 o startFeature
 public void startFeature(int kind,
                          java.lang.String field,
                          java.lang.String value)
called thru SAX parser startElement() for kFeatureItem at appearance of 1st note?

 o endFeature
 public void endFeature(int kind,
                        java.lang.String field,
                        java.lang.String value)
called thru SAX parser endElement()

 o addFeature
 public void addFeature(java.lang.String field,
                        java.lang.String value,
                        int level,
                        boolean append)
Overrides:
addFeature in class iubio.readseq.BioseqDocImpl
 o setIndent
 public void setIndent(int indent)
 o setOutput
 public void setOutput(java.io.Writer outs)
Overrides:
setOutput in class iubio.readseq.BioseqDocImpl
 o setOutput
 public void setOutput(java.io.OutputStream outs)
Overrides:
setOutput in class iubio.readseq.BioseqDocImpl
 o writeTo
 public int writeTo(java.io.Writer outs)
Overrides:
writeTo in class iubio.readseq.BioseqDocImpl
 o writeTo
 public int writeTo(java.io.Writer outs,
                    boolean doId)
Overrides:
writeTo in class iubio.readseq.BioseqDocImpl

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