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Class iubio.bioseq.SeqInfo

java.lang.Object
   |
   +----iubio.bioseq.SeqInfo

public class SeqInfo
extends java.lang.Object

Variable Index

 o kAmino
 o kDNA
 o kNucleic
 o kOtherSeq
 o kRNA

Constructor Index

 o SeqInfo()

Method Index

 o add(byte[], int, int)
 o add(char[], int, int)
 o add(int)
 o add(String, int, int)
 o equals(SeqInfo)
 o getACGTcounts()
 o getBaseCount()
 o getChecksum()
 o getKind()
 o getKindLabel()
 o getKindLabel(int)
 o getSeqInfo(int, boolean, boolean)
 o init(int)
 o setBaseCount(int)
 o setChecksum(long)
 o setKind(int)

Variables

 o kOtherSeq
 public static final short kOtherSeq
 o kDNA
 public static final short kDNA
 o kRNA
 public static final short kRNA
 o kNucleic
 public static final short kNucleic
 o kAmino
 public static final short kAmino

Constructors

 o SeqInfo
 public SeqInfo()

Methods

 o getKind
 public int getKind()
 o getBaseCount
 public int getBaseCount()
 o getChecksum
 public long getChecksum()
 o setKind
 public void setKind(int seqtype)
 o setBaseCount
 public void setBaseCount(int basecount)
 o setChecksum
 public void setChecksum(long checksum)
 o equals
 public boolean equals(iubio.bioseq.SeqInfo si)
 o getACGTcounts
 public int[] getACGTcounts()
 o init
 public void init(int maxlen)
 o add
 public void add(byte ba[],
                 int offset,
                 int len)
 o add
 public void add(char ca[],
                 int offset,
                 int len)
 o add
 public void add(java.lang.String s,
                 int offset,
                 int len)
 o add
 public void add(int c)
 o getSeqInfo
 public static iubio.bioseq.SeqInfo getSeqInfo(int maxlen,
                                               boolean shorttest,
                                               boolean wantcrc)
 o getKindLabel
 public java.lang.String getKindLabel()
 o getKindLabel
 public static java.lang.String getKindLabel(int kind)

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