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Class iubio.readseq.PlainSeqFormat

java.lang.Object
   |
   +----iubio.readseq.BioseqFormat
           |
           +----iubio.readseq.PlainSeqFormat

public class PlainSeqFormat
extends iubio.readseq.BioseqFormat

Constructor Index

 o PlainSeqFormat()

Method Index

 o canread()
 o canwrite()
 o contentType()
 o formatName()
 o formatSuffix()
 o formatTestInit()
 o formatTestLikelihood()
 o formatTestLine(OpenString, int, int)
 o newReader()
 o newWriter()
 o setSeqInfoTester(SeqInfo)

Constructors

 o PlainSeqFormat
 public PlainSeqFormat()

Methods

 o formatName
 public java.lang.String formatName()
Overrides:
formatName in class iubio.readseq.BioseqFormat
 o formatSuffix
 public java.lang.String formatSuffix()
Overrides:
formatSuffix in class iubio.readseq.BioseqFormat
 o contentType
 public java.lang.String contentType()
Overrides:
contentType in class iubio.readseq.BioseqFormat
 o newWriter
 public iubio.readseq.BioseqWriterIface newWriter()
Overrides:
newWriter in class iubio.readseq.BioseqFormat
 o canread
 public boolean canread()
Overrides:
canread in class iubio.readseq.BioseqFormat
 o canwrite
 public boolean canwrite()
Overrides:
canwrite in class iubio.readseq.BioseqFormat
 o setSeqInfoTester
 public void setSeqInfoTester(iubio.bioseq.SeqInfo si)
 o formatTestInit
 public void formatTestInit()
Overrides:
formatTestInit in class iubio.readseq.BioseqFormat
 o formatTestLine
 public boolean formatTestLine(flybase.OpenString line,
                               int atline,
                               int skiplines)
Overrides:
formatTestLine in class iubio.readseq.BioseqFormat
 o formatTestLikelihood
 public int formatTestLikelihood()
Overrides:
formatTestLikelihood in class iubio.readseq.BioseqFormat
 o newReader
 public iubio.readseq.BioseqReaderIface newReader()
Overrides:
newReader in class iubio.readseq.BioseqFormat

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