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Class iubio.readseq.BioseqFormat
java.lang.Object
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+----iubio.readseq.BioseqFormat
- public class BioseqFormat
- extends java.lang.Object
- implements iubio.readseq.BioseqIoIface
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BioseqFormat()
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canread()
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canwrite()
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contentType()
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formatDocName()
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formatID()
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formatName()
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formatSuffix()
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formatTestInit()
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formatTestLikelihood()
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formatTestLine(OpenString, int, int)
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getDocument()
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hasdoc()
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hasseq()
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interleaved()
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needsamelength()
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newReader()
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newWriter()
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recordStartLine()
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setFormatID(int)
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BioseqFormat
public BioseqFormat()
formatID
public int formatID()
setFormatID
public void setFormatID(int id)
formatName
public java.lang.String formatName()
formatSuffix
public java.lang.String formatSuffix()
contentType
public java.lang.String contentType()
formatDocName
public java.lang.String formatDocName()
canread
public boolean canread()
newReader
public iubio.readseq.BioseqReaderIface newReader()
canwrite
public boolean canwrite()
newWriter
public iubio.readseq.BioseqWriterIface newWriter()
interleaved
public boolean interleaved()
needsamelength
public boolean needsamelength()
hasdoc
public boolean hasdoc()
hasseq
public boolean hasseq()
getDocument
public java.io.InputStream getDocument()
formatTestInit
public void formatTestInit()
formatTestLine
public boolean formatTestLine(flybase.OpenString line,
int atline,
int skiplines)
formatTestLikelihood
public int formatTestLikelihood()
recordStartLine
public int recordStartLine()
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