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Class iubio.readseq.XmlDoc
java.lang.Object
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+----iubio.readseq.BioseqDocImpl
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+----iubio.readseq.XmlDoc
- public class XmlDoc
- extends iubio.readseq.BioseqDocImpl
BioseqDoc subclass for XML data
- See Also:
- iubio.readseq.XmlSeqReader, iubio.readseq.XmlSeqWriter
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xmlprop
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XmlDoc()
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XmlDoc(BioseqDoc)
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XmlDoc(String)
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addDocLine(String)
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addFeature(String, String, int, boolean)
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endFeature(int, String, String)
- called thru SAX parser endElement()
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getBiodockey(String)
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getFieldName(int)
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getXMLFieldName(int)
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getXMLFieldName(Integer)
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setIndent(int)
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setOutput(OutputStream)
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setOutput(Writer)
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setSourceDoc(BioseqDoc)
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startFeature(int, String, String)
- called thru SAX parser startElement() for kFeatureItem at appearance of 1st note?
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writeTo(Writer)
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writeTo(Writer, boolean)
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xmlprop
public static java.lang.String xmlprop
XmlDoc
public XmlDoc()
XmlDoc
public XmlDoc(iubio.readseq.BioseqDoc source)
XmlDoc
public XmlDoc(java.lang.String idname)
setSourceDoc
public void setSourceDoc(iubio.readseq.BioseqDoc source)
- Overrides:
- setSourceDoc in class iubio.readseq.BioseqDocImpl
addDocLine
public void addDocLine(java.lang.String line)
- Overrides:
- addDocLine in class iubio.readseq.BioseqDocImpl
getBiodockey
public java.lang.String getBiodockey(java.lang.String field)
- Overrides:
- getBiodockey in class iubio.readseq.BioseqDocImpl
getFieldName
public java.lang.String getFieldName(int kind)
- Overrides:
- getFieldName in class iubio.readseq.BioseqDocImpl
getXMLFieldName
public static final java.lang.String getXMLFieldName(int kind)
getXMLFieldName
public static java.lang.String getXMLFieldName(java.lang.Integer kind)
startFeature
public void startFeature(int kind,
java.lang.String field,
java.lang.String value)
- called thru SAX parser startElement() for kFeatureItem at appearance of 1st note?
endFeature
public void endFeature(int kind,
java.lang.String field,
java.lang.String value)
- called thru SAX parser endElement()
addFeature
public void addFeature(java.lang.String field,
java.lang.String value,
int level,
boolean append)
- Overrides:
- addFeature in class iubio.readseq.BioseqDocImpl
setIndent
public void setIndent(int indent)
setOutput
public void setOutput(java.io.Writer outs)
- Overrides:
- setOutput in class iubio.readseq.BioseqDocImpl
setOutput
public void setOutput(java.io.OutputStream outs)
- Overrides:
- setOutput in class iubio.readseq.BioseqDocImpl
writeTo
public int writeTo(java.io.Writer outs)
- Overrides:
- writeTo in class iubio.readseq.BioseqDocImpl
writeTo
public int writeTo(java.io.Writer outs,
boolean doId)
- Overrides:
- writeTo in class iubio.readseq.BioseqDocImpl
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