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Class iubio.bioseq.BioseqFiled
java.lang.Object
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+----iubio.bioseq.Bioseq
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+----iubio.bioseq.BioseqFiled
- public class BioseqFiled
- extends iubio.bioseq.Bioseq
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BioseqFiled()
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BioseqFiled(byte[])
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BioseqFiled(byte[], int, int)
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BioseqFiled(char[])
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BioseqFiled(char[], int, int)
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BioseqFiled(File, boolean)
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BioseqFiled(int)
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BioseqFiled(String)
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basebyte(int)
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clone()
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copyFrom(File)
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copyFrom(Object)
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finalize()
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getSeqStats(int, int)
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getSeqtype()
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isBytes()
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length()
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setbase(int, byte)
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setbases(byte[])
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toBytes(int)
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toBytes(int, int, int)
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toChars(int, int, int)
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BioseqFiled
public BioseqFiled()
BioseqFiled
public BioseqFiled(int maxlen)
BioseqFiled
public BioseqFiled(byte b[])
BioseqFiled
public BioseqFiled(byte b[],
int offs,
int len)
BioseqFiled
public BioseqFiled(char c[])
BioseqFiled
public BioseqFiled(char c[],
int offs,
int len)
BioseqFiled
public BioseqFiled(java.lang.String s)
BioseqFiled
public BioseqFiled(java.io.File f,
boolean readwrite)
copyFrom
public void copyFrom(java.lang.Object ob)
- Overrides:
- copyFrom in class iubio.bioseq.Bioseq
copyFrom
public void copyFrom(java.io.File f)
finalize
public void finalize() throws java.lang.Throwable
- Overrides:
- finalize in class java.lang.Object
length
public int length()
- Overrides:
- length in class iubio.bioseq.Bioseq
setbases
public void setbases(byte theBases[])
- Overrides:
- setbases in class iubio.bioseq.Bioseq
setbase
public void setbase(int i,
byte b)
- Overrides:
- setbase in class iubio.bioseq.Bioseq
basebyte
public byte basebyte(int i)
- Overrides:
- basebyte in class iubio.bioseq.Bioseq
isBytes
public boolean isBytes()
- Overrides:
- isBytes in class iubio.bioseq.Bioseq
toBytes
public byte[] toBytes(int basepart)
- Overrides:
- toBytes in class iubio.bioseq.Bioseq
toBytes
public byte[] toBytes(int offset,
int count,
int basepart)
- Overrides:
- toBytes in class iubio.bioseq.Bioseq
toChars
public char[] toChars(int offset,
int count,
int basepart)
- Overrides:
- toChars in class iubio.bioseq.Bioseq
clone
public java.lang.Object clone()
- Overrides:
- clone in class iubio.bioseq.Bioseq
getSeqtype
public int getSeqtype()
- Overrides:
- getSeqtype in class iubio.bioseq.Bioseq
getSeqStats
public iubio.bioseq.SeqInfo getSeqStats(int offset,
int seqlen)
- Overrides:
- getSeqStats in class iubio.bioseq.Bioseq
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