Preplot - Process results of LRmapqtl and Zmapqtl for input to gnuplot
Preplot [ -o output ] [ -m mapfile ] [ -l lrfile ] [ -z zfile ] [ -q qtlfile ] [ -S threshold ] [ -T terminal ] [ -H hypo ] [ -L lod ]
Preplot reformats the output of LRmapqtl and Zmapqtl so that it can be plotted by GNUPLOT. It requires a molecular map that was used in the analysis of the data with LRmapqtl and Zmapqtl.
See QTLcart(1) for more information on the global options -h for help, -A for automatic, -V for non-Verbose -W path for a working directory, -R file to specify a resource file, -e to specify the log file, -s to specify a seed for the random number generator and -X stem to specify a filename stem. The options below are specific to this program.
If you use this program without specifying any options, then you will get into a menu that allows you to set them interactively.
% Preplot -L 1
Preplot will automagically reformat your results to be plotted by GNUPLOT, converting the likelihood ratio test statistics into LOD scores along the way.
Preplot will search for the ouput files from Rqtl, Eqtl and MImapqtl and try to process them. If you don't want them processed, rename or move the files. Note that Preplot only searches for files with names stem.eqt, stem.qtl and stem.mqt, where stem is the filename stem.
Preplot ignores JZmapqtl output.
Rmap(1), Rqtl(1), Rcross(1), Qstats(1), LRmapqtl(1), SRmapqtl(1), JZmapqtl(1), Eqtl(1), Prune(1), Zmapqtl(1), QTLcart(1)
In general, it is best to contact us via email (basten@statgen.ncsu.edu)
Christopher J. Basten, B. S. Weir and Z.-B. Zeng
Department of Statistics, North Carolina State University
Raleigh, NC 27695-8203, USA
Phone: (919)515-1934