EWThreshold - Calculate the Experimentwise Threshold from a permutation test
EWThreshold [ -s size ] [ -h ] < input
EWThreshold reads from the standard input and writes to the standard output. It reads the results of permutation test that are in the format of ZipermE.out. It sorts the likelihood maxima from that file and prints out the 100(1 - size)th percentile.
After running the example outlined in the GetMaxLR manpage, you can run
% EWThreshold -s 0.01 < corn.z3.e
to get the experimentwise threshold for a 1% test. The threshold will be printed to the standard output.
Zmapqtl(1), Prune(1), GetMaxLR(1)
In general, it is best to contact us via email (basten@statgen.ncsu.edu)
Christopher J. Basten, B. S. Weir and Z.-B. Zeng
Department of Statistics, North Carolina State University
Raleigh, NC 27695-8203, USA
Phone: (919)515-1934