Draw pretty views of biosequences, Java command-line version,
to output in various graphic formats.
Usage: jre -cp drawseq.jar run [options] input-file(s)
Options
styles=seqstyle.properties use file with style properties instead of defaults
colors=seqcolor.properties use file with base color properties instead of defaults
format=name Format name for output
see Formats list below for names
out[put]=out.pict output file name
in[put]=input.seq input file name ('in=' not required)
nativeawt use native AWT toolkit (not good for Unix commandline use)
pipe Pipe (command line, stdout)
verb[ose] Verbose progress
inform[at]=# input sequence format number, or
inform[at]=Name input sequence format name. Assume input data is this format
range=10..100 select sequences subrange
range=join(10..100,200..300,500..600)
feat[ures]=exon,CDS... extract sequence of selected features
nofeat[ures]=repeat_region,intron... remove sequence of selected features
Can't mix feature and nofeature.
Applies only with input feature tables.
Styles values include (see example styles file for more)
Sequence.width=50 sequence line width
Sequence.nameleft=false name on left/right side
Sequence.nameright=true
Sequence.numleft=true seq index on left/right side
Sequence.numright=true
Sequence.numtop=true index on top/bottom
Sequence.numbot=false
This program requires a Java runtime (jre) program, version 1.1.x
All non-options (no '=') are used as input file names.