BCM Search Launcher: Multiple Sequence Alignments

Cut and paste sequences here (Most ReadSeq formats accepted);
All sequences must be in the same format; See below for size/time limits.

Choose alignment method:
[H][O][P] = [H]:Help/description; [O]:full Options form; [P]:search Parameters

ClustalW 1.5 (DNA/Protein) - Global progressive (BCM) [H] [O] [P]
MAP (DNA/Protein) - Global progressive in linear space (BCM) [H] [O] [P]
PIMA 1.4 (Protein only) - Pattern-Induced (local) Multiple Alignment (BCM) [H] [O] [P]
MSA 2.1 (Protein only) - Near-optimal sum-of-pairs global (WashU) [H] [O] [P] New!!
BLOCK MAKER (Protein only) - Finds conserved blocks in seq sets (FHCRC) [H] [O] [P]

Size/Time limits for the multiple alignments are:
ClustalW, MAP, and PIMA:  20,000 characters and 60 minutes.
MSA:  8 sequences, 800 characters and 10 minutes.
BLOCK MAKER:  250 sequences.