BCM Search Launcher: Multiple Sequence Alignments
Cut and paste sequences here (
Most ReadSeq formats accepted
);
All sequences must be in the same format; See below for size/time limits.
%1
Choose alignment method:
[H][O][P] = [H]:Help/description; [O]:full Options form; [P]:search Parameters
ClustalW 1.5
(DNA/Protein) - Global progressive (BCM) [
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MAP
(DNA/Protein) - Global progressive in linear space (BCM) [
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PIMA 1.4
(Protein only) - Pattern-Induced (local) Multiple Alignment (BCM) [
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MSA 2.1
(Protein only) - Near-optimal sum-of-pairs global (WashU) [
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BLOCK MAKER
(Protein only) - Finds conserved blocks in seq sets (FHCRC) [
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Size/Time limits
for the multiple alignments are:
ClustalW, MAP, and PIMA: 20,000 characters and 60 minutes.
MSA: 8 sequences, 800 characters and 10 minutes.
BLOCK MAKER: 250 sequences.