BCM Search Launcher: Gene Feature Searches

Nucleic acid sequence:

Sequence name/identifier (optional):
Choose search method:
[H][O][P] = [H]:Help/description; [O]:full Options search; [P]:search Parameters

GRAIL - exon prediction from genomic sequence (ORNL) [H] [O] [P]
FGENEH - gene model construction from human genomic sequence (BCM Gene Finder) [H] [O] [P]
FEXH - human 5', internal, and 3' exon prediction (BCM Gene Finder) [H] [O] [P]
HEXON - search for human potential internal exons (BCM Gene Finder) [H] [O] [P]
HSPL - search for potential human splice sites (BCM Gene Finder) [H] [O] [P]
RNASPL - search for exon-exon junction positions in human cDNA (BCM Gene Finder) [H]
CDSB - search for protein coding region in E.coli (BCM Gene Finder) [H]
HBR - recognition of human and E.coli sequences (BCM Gene Finder) [H]
POLYAH - recognition of 3'-end cleavage and polyadenilation regions (BCM Gene Finder) [H]
TSSG - recognition of human PolII promotor region and start of transcription (BCM Gene Finder) [H]
TSSW - recognition of human PolII promotor region and start of transcription (BCM Gene Finder) [H]
ORF ID / Eukaryotic - any start codon and minimum 25aa (U. Minn.) [H] [O] [P]
ORF ID / Prokaryotic - Met start codon and minimum 100aa (U. Minn.) [H] [O] [P]


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